This dataset includes underlying data for the publication "Evaluating parameterization protocols for hydration free energy calculations with the AMOEBA polarizable force field" Contents: Modified valence parameters for the Poltype software (valence.py). This can be substituted for the existing valence.py module packaged with Poltype to make the parameter assignment changes detailed in the article supplementary information. Results files for each parameter set (*.txt). Each consists of a 4 x 47 array of numbers. Rows correspond to entries for each sequential ligand. The first column in each row is the experimental hydration free energy. The following three rows are computational hydration free energy predictions from three independent rep...
Computer simulations of biomolecular systems often use force fields, which are combinations of simpl...
International audienceClassical molecular dynamics (MD) simulations of electrolyte systems are impor...
<div>Computer simulations of bio-molecular systems often use force fields, which are combinations of...
<p>This dataset includes underlying data for the publication "Evaluating<br> parameterization protoc...
This dataset includes underlying data for the publication "Evaluating parameterization protoco...
This dataset provides the parameters and results generated for the study "Evaluation of solvation fr...
This dataset provides the parameters and results generated for the study "Evaluation of solvati...
This dataset includes additional underlying data for the publication "Evaluating parameterization pr...
This dataset includes additional underlying data for the publication "Evaluating parameterizati...
Hydration free energy (HFE) calculations are often used to assess the performance of biomolecular fo...
Abstract A protocol to generate parameters for the AMOEBA polarizable force field for small organic ...
Hydration free energy calculations are often used to validate molecular simulation methodologies and...
This work provides a curated database of experimental and calculated hydration free energies for sma...
The free energy calculation library PLUMED has been incorporated into the OpenMM simulation toolkit,...
Small molecules are ubiquitous in protein, DNA, and RNA systems of interest. Affinity prediction and...
Computer simulations of biomolecular systems often use force fields, which are combinations of simpl...
International audienceClassical molecular dynamics (MD) simulations of electrolyte systems are impor...
<div>Computer simulations of bio-molecular systems often use force fields, which are combinations of...
<p>This dataset includes underlying data for the publication "Evaluating<br> parameterization protoc...
This dataset includes underlying data for the publication "Evaluating parameterization protoco...
This dataset provides the parameters and results generated for the study "Evaluation of solvation fr...
This dataset provides the parameters and results generated for the study "Evaluation of solvati...
This dataset includes additional underlying data for the publication "Evaluating parameterization pr...
This dataset includes additional underlying data for the publication "Evaluating parameterizati...
Hydration free energy (HFE) calculations are often used to assess the performance of biomolecular fo...
Abstract A protocol to generate parameters for the AMOEBA polarizable force field for small organic ...
Hydration free energy calculations are often used to validate molecular simulation methodologies and...
This work provides a curated database of experimental and calculated hydration free energies for sma...
The free energy calculation library PLUMED has been incorporated into the OpenMM simulation toolkit,...
Small molecules are ubiquitous in protein, DNA, and RNA systems of interest. Affinity prediction and...
Computer simulations of biomolecular systems often use force fields, which are combinations of simpl...
International audienceClassical molecular dynamics (MD) simulations of electrolyte systems are impor...
<div>Computer simulations of bio-molecular systems often use force fields, which are combinations of...